3LVR	Protein Transport	date	Feb 22, 2010
title	The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium
authors	S.A.Ismail, I.R.Vetter, B.Sot, A.Wittinghofer
compound		source
Molecule: Arf-Gap With Sh3 Domain, Ank Repeat And Ph Domain Containing Protein 3, Adp-Ribosylation Factor 6; Chain: E Fragment: Gap And Ankyrin Domain, Residues 416-697, Residue Synonym: Asap3, Development And Differentiation-Enhancing F 1, Protein Up-Regulated In Liver Cancer 1, Arf6, Uplc1; Engineered: Yes Other_details: Missing The N-Terminus Amphipathic Helix For		Organism_scientific: Homo Sapiens, Synthetic Construct Organism_common: Human Organism_taxid: 9606, 32630 Gene: Asap3, Arf6 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 62	R_factor 0.207 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 146.450 146.450 49.620 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.38 Å
ligand	AF3, CA, GDP, MG, ZN	enzyme
Gene Ontology	Chain Function Process Component E synaptic vesicle endocytosis...
Primary reference	The structure of an Arf-ArfGAP complex reveals a Ca2+ regulatory mechanism., Ismail SA, Vetter IR, Sot B, Wittinghofer A, Cell. 2010 May 28;141(5):812-21. PMID:20510928

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk] Biological Unit Coordinates (3lvr.pdb1.gz) 141 Kb LPC: Ligand-Protein Contacts for 3LVR CSU: Contacts of Structural Units for 3LVR Structure Factors (106 Kb) Retrieve 3LVR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LVR from S2C, [Save to disk] Re-refined 3lvr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LVR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3LVR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LVR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lvr] [3lvr_E] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3LVR: [ANK] [ARF] [ArfGap] [small_GTPase ] by SMART

Other resources with information on 3LVR

Community annotation for 3LVR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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