3LXN Transferase date Feb 25, 2010
title Structural And Thermodynamic Characterization Of The Tyk2 An Kinase Domains In Complex With Cp-690550 And Cmp-6
authors J.E.Chrencik, T.E.Benson
compound source
Molecule: Non-Receptor Tyrosine-Protein Kinase Tyk2
Chain: A
Fragment: Kinase Domain
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tyk2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf21
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.220 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.306 74.262 106.460 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand MI1, PTR BindingDB enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and Thermodynamic Characterization of the TYK2 and JAK3 Kinase Domains in Complex with CP-690550 and CMP-6., Chrencik JE, Patny A, Leung IK, Korniski B, Emmons TL, Hall T, Weinberg RA, Gormley JA, Williams JM, Day JE, Hirsch JL, Kiefer JR, Leone JW, Fischer HD, Sommers CD, Huang HC, Jacobsen EJ, Tenbrink RE, Tomasselli AG, Benson TE, J Mol Biol. 2010 May 15. PMID:20478313
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3lxn.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3LXN
  • CSU: Contacts of Structural Units for 3LXN
  • Structure Factors (157 Kb)
  • Retrieve 3LXN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LXN from S2C, [Save to disk]
  • Re-refined 3lxn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LXN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LXN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LXN, from MSDmotif at EBI
  • Fold representative 3lxn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lxn_A] [3lxn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LXN: [TyrKc ] by SMART
  • Other resources with information on 3LXN
  • Community annotation for 3LXN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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