3LYI	Transcription	date	Feb 26, 2010
title	Pwwp Domain Of Human Bromodomain-Containing Protein 1
authors	R.Lam, H.Zeng, S.Ni, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edw A.Bochkarev, J.Min, H.Wu, Structural Genomics Consortium (Sgc)
compound		source
Molecule: Bromodomain-Containing Protein 1 Chain: A, B Fragment: Pwwp Domain, Residues 925-1049 Synonym: Br140-Like Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Brd1, Brl, Brpf2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-(De3)-V2r-Prare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Mhl
symmetry	Space Group: P 21 21 21	R_factor 0.234 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.029 46.085 130.712 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	OCS	enzyme
note	3LYI is a representative structure
Primary reference	Structural and Histone Binding Ability Characterizations of Human PWWP Domains., Wu H, Zeng H, Lam R, Tempel W, Amaya MF, Xu C, Dombrovski L, Qiu W, Wang Y, Min J, PLoS One. 2011;6(6):e18919. Epub 2011 Jun 20. PMID:21720545

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk] Biological Unit Coordinates (3lyi.pdb1.gz) 43 Kb Biological Unit Coordinates (3lyi.pdb2.gz) 37 Kb LPC: Ligand-Protein Contacts for 3LYI CSU: Contacts of Structural Units for 3LYI Structure Factors (239 Kb) Retrieve 3LYI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LYI from S2C, [Save to disk] Re-refined 3lyi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LYI in 3D

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Visual 3D analysis of 3LYI

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3LYI, from MSDmotif at EBI Fold representative 3lyi from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lyi_A] [3lyi] [3lyi_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3LYI: [PWWP ] by SMART

Other resources with information on 3LYI

Community annotation for 3LYI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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