3LZG Viral Protein Immune System date Mar 01, 2010
title Crystal Structure Of A 2009 H1n1 Influenza Virus Hemagglutin
authors R.Xu, I.A.Wilson
compound source
Molecule: Hemagglutinin, Ha1 Subunit
Chain: A, C, E, G, I, K
Fragment: Ectodomain Ha1, Residues 18-344
Engineered: Yes
Organism_scientific: Influenza A Virus
Organism_taxid: 641501
Strain: Acalifornia042009
Gene: Ha, Hemagglutinin
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_strain: Hi5
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac-Ht

Molecule: Hemagglutinin, Ha2 Subunit
Chain: B, D, F, H, J, L
Fragment: Ectodomain Ha2, Residues 345-520
Engineered: Yes

Organism_scientific: Influenza A Virus
Organism_taxid: 641501
Strain: Acalifornia042009
Gene: Ha, Hemagglutinin
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_strain: Hi5
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac-Ht
symmetry Space Group: P 1
R_factor 0.181 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.677 118.313 120.073 117.37 92.67 100.84
method X-Ray Diffractionresolution 2.60 Å
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, K, E, C, I, G


F, J, B, H, D, L


Primary referenceStructural Basis of Preexisting Immunity to the 2009 H1N1 Pandemic Influenza Virus., Xu R, Ekiert DC, Krause JC, Hai R, Crowe JE Jr, Wilson IA, Science. 2010 Mar 25. PMID:20339031
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (994 Kb) [Save to disk]
  • Biological Unit Coordinates (3lzg.pdb1.gz) 499 Kb
  • Biological Unit Coordinates (3lzg.pdb2.gz) 495 Kb
  • LPC: Ligand-Protein Contacts for 3LZG
  • CSU: Contacts of Structural Units for 3LZG
  • Structure Factors (1828 Kb)
  • Retrieve 3LZG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LZG from S2C, [Save to disk]
  • Re-refined 3lzg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LZG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LZG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LZG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lzg_F] [3lzg_L] [3lzg_J] [3lzg_G] [3lzg_H] [3lzg] [3lzg_K] [3lzg_E] [3lzg_C] [3lzg_I] [3lzg_B] [3lzg_D] [3lzg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LZG
  • Community annotation for 3LZG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science