3M2W Transferase date Mar 08, 2010
title Crystal Structure Of Mapkak Kinase 2 (Mk2) Complexed With A Spiroazetidine-Tetracyclic Atp Site Inhibitor
authors M.Kroemer, L.Revesz, C.Be, A.Izaac, C.Huppertz, A.Schlapbach, C.Sc
compound source
Molecule: Map Kinase-Activated Protein Kinase 2
Chain: A
Fragment: Kinase Domain
Synonym: Mapk-Activated Protein Kinase 2, Mapkap Kinase 2, Mk2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapkapk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Tuner
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 63 2 2
R_factor 0.185 R_Free 0.227
length a length b length c angle alpha angle beta angle gamma
102.982 102.982 165.433 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.41 Å
ligand L8I, MG BindingDB enzyme Transferase E.C. BRENDA

Primary referenceIn vivo and in vitro SAR of tetracyclic MAPKAP-K2 (MK2) inhibitors. Part II., Revesz L, Schlapbach A, Aichholz R, Dawson J, Feifel R, Hawtin S, Littlewood-Evans A, Koch G, Kroemer M, Mobitz H, Scheufler C, Velcicky J, Huppertz C, Bioorg Med Chem Lett. 2010 Aug 1;20(15):4719-23. Epub 2010 Apr 11. PMID:20591669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3m2w.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3M2W
  • CSU: Contacts of Structural Units for 3M2W
  • Structure Factors (306 Kb)
  • Retrieve 3M2W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3M2W from S2C, [Save to disk]
  • Re-refined 3m2w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3M2W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3M2W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3M2W, from MSDmotif at EBI
  • Fold representative 3m2w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3m2w_A] [3m2w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3M2W: [S_TKc ] by SMART
  • Other resources with information on 3M2W
  • Community annotation for 3M2W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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