3M2W	Transferase	date	Mar 08, 2010
title	Crystal Structure Of Mapkak Kinase 2 (Mk2) Complexed With A Spiroazetidine-Tetracyclic Atp Site Inhibitor
authors	M.Kroemer, L.Revesz, C.Be, A.Izaac, C.Huppertz, A.Schlapbach, C.Sc
compound		source
Molecule: Map Kinase-Activated Protein Kinase 2 Chain: A Fragment: Kinase Domain Synonym: Mapk-Activated Protein Kinase 2, Mapkap Kinase 2, Mk2; Ec: 2.7.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mapkapk2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Tuner Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet
symmetry	Space Group: P 63 2 2	R_factor 0.185 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.982 102.982 165.433 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.41 Å
ligand	L8I, MG BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A nucleotide binding protein kinase activity protein serine/threonine kin... signal transducer activity protein binding ATP binding kinase activity transferase activity transferase activity, transf... MAPK cascade activation of MAPK activity toll-like receptor signaling... MyD88-dependent toll-like re... MyD88-independent toll-like ... protein phosphorylation leukotriene metabolic proces... response to stress inflammatory response response to DNA damage stimu... Ras protein signal transduct... gene expression RNA metabolic process mRNA metabolic process phosphorylation peptidyl-serine phosphorylat... arachidonic acid metabolic p... G2 DNA damage checkpoint response to lipopolysacchari... regulation of interleukin-6 ... regulation of tumor necrosis... toll-like receptor 2 signali... toll-like receptor 3 signali... toll-like receptor 4 signali... toll-like receptor 5 signali... toll-like receptor 9 signali... toll-like receptor 10 signal... TRIF-dependent toll-like rec... cellular response to vascula... toll-like receptor TLR1:TLR2... toll-like receptor TLR6:TLR2... small molecule metabolic pro... macropinocytosis innate immune response vascular endothelial growth ... neurotrophin TRK receptor si... mRNA stabilization inner ear development stress-activated MAPK cascad... 3'-UTR-mediated mRNA stabili... nucleus nucleoplasm cytoplasm cytosol
Primary reference	In vivo and in vitro SAR of tetracyclic MAPKAP-K2 (MK2) inhibitors. Part II., Revesz L, Schlapbach A, Aichholz R, Dawson J, Feifel R, Hawtin S, Littlewood-Evans A, Koch G, Kroemer M, Mobitz H, Scheufler C, Velcicky J, Huppertz C, Bioorg Med Chem Lett. 2010 Aug 1;20(15):4719-23. Epub 2010 Apr 11. PMID:20591669

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (3m2w.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 3M2W CSU: Contacts of Structural Units for 3M2W Structure Factors (306 Kb) Retrieve 3M2W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3M2W from S2C, [Save to disk] Re-refined 3m2w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3M2W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3M2W

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3M2W, from MSDmotif at EBI Fold representative 3m2w from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3m2w_A] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 3M2W with the sequences similar proteins can be viewed for 3M2W's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 3M2W

Community annotation for 3M2W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2010 Bioinformatics Unit Weizmann Institute of Science

---