3M37	Hydrolase	date	Mar 08, 2010
title	Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl) Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3- (Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
authors	R.S.Alexander
compound		source
Molecule: Coagulation Factor X Chain: A Fragment: Peptidase S1 Synonym: Stuart Factor, Stuart-Prower Factor Ec: 3.4.21.6		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Coagulation Factor X Chain: L Fragment: Unp Residues 127-178 Synonym: Stuart Factor, Stuart-Prower Factor Ec: 3.4.21.6		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.225 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.100 72.200 78.700 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	CA, M37 BindingDB	enzyme	Hydrolase E.C.3.4.21.6 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of 1-(2-aminomethylphenyl)-3-trifluoromethyl-N- [3-fluoro-2'-(aminosulfonyl)[1,1'-biphenyl)]-4-yl]-1H-pyrazole-5-carboxyam ide (DPC602), a potent, selective, and orally bioavailable factor Xa inhibitor(1)., Pruitt JR, Pinto DJ, Galemmo RA Jr, Alexander RS, Rossi KA, Wells BL, Drummond S, Bostrom LL, Burdick D, Bruckner R, Chen H, Smallwood A, Wong PC, Wright MR, Bai S, Luettgen JM, Knabb RM, Lam PY, Wexler RR, J Med Chem. 2003 Dec 4;46(25):5298-315. PMID:14640539

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (3m37.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 3M37 CSU: Contacts of Structural Units for 3M37 Structure Factors (369 Kb) Retrieve 3M37 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3M37 from S2C, [Save to disk] Re-refined 3m37 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3M37 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3M37

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3M37, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3m37] [3m37_A] [3m37_L] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3M37: [EGF] [Tryp_SPc ] by SMART

Other resources with information on 3M37

Community annotation for 3M37 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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