3M54	Transferase	date	Mar 12, 2010
title	Set79 Y305f In Complex With Taf10 Peptide And Adohcy
authors	P.A.Del Rizzo, J.F.Couture, M.S.Roiko, B.S.Strunk, J.S.Brunzell L.M.Dirk, R.L.Houtz, R.C.Trievel
compound		source
Molecule: Histone-Lysine N-Methyltransferase Setd7 Chain: A Fragment: Unp Residues 110-366 Synonym: Histone H3-K4 Methyltransferase Setd7, H3-K4-Hmtas Set Domain-Containing Protein 7, Set79, Lysine N-Methyltra 7; Ec: 2.1.1.43 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Strain: 9606 Gene: Kiaa1717, Kmt7, Set7, Set9, Setd7 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Rosetta2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Phis2
Molecule: Taf10 Peptide Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 32 2 1	R_factor 0.198 R_Free 0.219
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.725 83.725 96.050 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	ACE, SAH	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	SET7/9 catalytic mutants reveal the role of active site water molecules in lysine multiple methylation., Del Rizzo PA, Couture JF, Dirk LM, Strunk BS, Roiko MS, Brunzelle JS, Houtz RL, Trievel RC, J Biol Chem. 2010 Oct 8;285(41):31849-58. Epub 2010 Aug 1. PMID:20675860

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (3m54.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 3M54 CSU: Contacts of Structural Units for 3M54 Structure Factors (1185 Kb) Retrieve 3M54 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3M54 from S2C, [Save to disk] Re-refined 3m54 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3M54 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3M54

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3M54, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3m54_B] [3m54_A] [3m54] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3M54: [SET ] by SMART

Other resources with information on 3M54

Community annotation for 3M54 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---