3M56 Transferase date Mar 12, 2010
title Set79 Y305f In Complex With Taf10-K189me2 Peptide And Adohc
authors P.A.Del Rizzo, J.F.Couture, M.S.Roiko, B.S.Strunk, J.S.Brunzell L.M.Dirk, R.L.Houtz, R.C.Trievel
compound source
Molecule: Histone-Lysine N-Methyltransferase Setd7
Chain: A
Fragment: Unp Residues 110-366
Synonym: Histone H3-K4 Methyltransferase Setd7, H3-K4-Hmtas Set Domain-Containing Protein 7, Set79, Lysine N-Methyltra 7;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: 9606
Gene: Kiaa1717, Kmt7, Set7, Set9, Setd7
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis2

Molecule: Taf10-K189me2 Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 32 2 1
R_factor 0.193 R_Free 0.221
length a length b length c angle alpha angle beta angle gamma
82.953 82.953 95.575 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.65 Å
ligand ACE, MLY, SAH enzyme Transferase E.C. BRENDA

Primary referenceSET7/9 catalytic mutants reveal the role of active site water molecules in lysine multiple methylation., Del Rizzo PA, Couture JF, Dirk LM, Strunk BS, Roiko MS, Brunzelle JS, Houtz RL, Trievel RC, J Biol Chem. 2010 Oct 8;285(41):31849-58. Epub 2010 Aug 1. PMID:20675860
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3m56.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3M56
  • CSU: Contacts of Structural Units for 3M56
  • Structure Factors (1059 Kb)
  • Retrieve 3M56 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3M56 from S2C, [Save to disk]
  • Re-refined 3m56 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3M56 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3M56
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3M56, from MSDmotif at EBI
  • Fold representative 3m56 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3m56_A] [3m56] [3m56_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3M56: [SET ] by SMART
  • Other resources with information on 3M56
  • Community annotation for 3M56 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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