3M5B Transcription date Mar 12, 2010
title Crystal Structure Of The Btb Domain From Fazfzbtb32
authors P.J.Stogios, N.C.Pomroy, G.G.Prive
compound source
Molecule: Zinc Finger And Btb Domain-Containing Protein 32
Chain: A, B
Fragment: Btb Domain From Fazfzbtb32
Synonym: Fanconi Anemia Zinc Finger Protein, Testis Zinc Fi Protein, Fancc-Interacting Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fazf, Tzfp, Zbtb32
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codon Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-32(A)
symmetry Space Group: P 1 2 1
R_factor 0.186 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.076 32.809 69.425 90.00 108.20 90.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceInsights into strand-exchange in BTB domain dimers from the crystal structures of FAZF and Miz1., Stogios PJ, Cuesta-Seijo JA, Chen L, Pomroy NC, Prive GG, J Mol Biol. 2010 May 19. PMID:20493880
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (3m5b.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (3m5b.pdb2.gz) 37 Kb
  • CSU: Contacts of Structural Units for 3M5B
  • Structure Factors (209 Kb)
  • Retrieve 3M5B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3M5B from S2C, [Save to disk]
  • Re-refined 3m5b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3M5B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3M5B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3M5B, from MSDmotif at EBI
  • Fold representative 3m5b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3m5b_B] [3m5b_A] [3m5b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3M5B: [BTB ] by SMART
  • Other resources with information on 3M5B
  • Community annotation for 3M5B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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