3M7N	Hydrolase Rna	date	Mar 16, 2010
title	Archaeoglobus Fulgidus Exosome With Rna Bound To The Active
authors	S.Hartung, K.P.Hopfner
compound		source
Molecule: Putative Uncharacterized Protein Af_0206 Chain: A, B, C Synonym: Exosome Rna Binding Protein Csl4 Engineered: Yes		Organism_scientific: Archaeoglobus Fulgidus Organism_taxid: 2234 Gene: Af_0206 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-28
Molecule: Probable Exosome Complex Exonuclease 1 Chain: D, E, F Synonym: Exosome Rna Binding Protein Rrp41 Ec: 3.1.13.- Engineered: Yes Mutation: Yes		Organism_scientific: Archaeoglobus Fulgidus Organism_taxid: 2234 Gene: Af_0493 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-21
Molecule: Probable Exosome Complex Exonuclease 2 Chain: G, H, I Synonym: Exosome Rna Binding Protein Rrp42 Ec: 3.1.13.- Engineered: Yes		Organism_scientific: Archaeoglobus Fulgidus Organism_taxid: 2234 Gene: Af_0494 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-21
Molecule: 5'-R(Cupcpcpcpc)-3' Chain: X, Y, Z Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 43 2 2	R_factor 0.197 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 138.268 138.268 262.273 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	ZN	enzyme	Hydrolase E.C.3.1.13 BRENDA
Gene	AF ; AF ; AF
Gene Ontology	Chain Function Process Component A, B, C F, E, D 3'-5'-exoribonuclease activi... nuclease activity exonuclease activity exoribonuclease activity, pr... H, I, G
Primary reference	Quantitative analysis of processive RNA degradation by the archaeal RNA exosome., Hartung S, Niederberger T, Hartung M, Tresch A, Hopfner KP, Nucleic Acids Res. 2010 Apr 14. PMID:20392821

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (343 Kb) [Save to disk] Biological Unit Coordinates (3m7n.pdb1.gz) 336 Kb LPC: Ligand-Protein Contacts for 3M7N CSU: Contacts of Structural Units for 3M7N Structure Factors (532 Kb) Retrieve 3M7N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3M7N from S2C, [Save to disk] Re-refined 3m7n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3M7N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3M7N

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3M7N, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3m7n_H] [3m7n_A] [3m7n_D] [3m7n_G] [3m7n_I] [3m7n_C] [3m7n_F] [3m7n] [3m7n_E] [3m7n_Z] [3m7n_B] [3m7n_X] [3m7n_Y] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3M7N: [S1 ] by SMART

Other resources with information on 3M7N

Community annotation for 3M7N at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---