3M7R	Transcription	date	Mar 17, 2010
title	Crystal Structure Of Vdr H305q Mutant
authors	N.Rochel, S.Hourai, D.Moras, Structural Proteomics In Europe (S
compound		source
Molecule: Vitamin D3 Receptor Chain: A Fragment: Vdr, Unp Residues 120-423 Synonym: Vdr, 1,25-Dihydroxyvitamin D3 Receptor, Nuclear Re Subfamily 1 Group I Member 1; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr1i1, Vdr Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: P 21 21 21	R_factor 0.211 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.402 51.670 131.888 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	VDX	enzyme
note	3M7R (Molecule of the Month:pdb155)
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of hereditary vitamin D-resistant rickets-Associated mutant H305Q of vitamin D nuclear receptor bound to its natural ligand., Rochel N, Hourai S, Moras D, J Steroid Biochem Mol Biol. 2010 Apr 18. PMID:20403435

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (3m7r.pdb1.gz) 44 Kb LPC: Ligand-Protein Contacts for 3M7R CSU: Contacts of Structural Units for 3M7R Structure Factors (265 Kb) Retrieve 3M7R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3M7R from S2C, [Save to disk] Re-refined 3m7r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3M7R in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3M7R

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3M7R, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3m7r_A] [3m7r] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3M7R: [HOLI ] by SMART

Other resources with information on 3M7R

Community annotation for 3M7R at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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