3M8V Transcription date Mar 19, 2010
title Crystal Structure Of The Btb Domain From Kaisozbtb33, Form
authors T.K.Nielsen, P.J.Stogios, G.G.Prive
compound source
Molecule: Transcriptional Regulator Kaiso
Chain: A
Fragment: Btb Domain From Kaisozbtb33, Unp Residues 1-122
Synonym: Zinc Finger And Btb Domain-Containing Protein 33
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kaiso, Zbtb33, Znf348
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Codon Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-32(A)
symmetry Space Group: P 63 2 2
R_factor 0.201 R_Free 0.244
length a length b length c angle alpha angle beta angle gamma
114.797 114.797 62.228 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3m8v.pdb1.gz) 77 Kb
  • CSU: Contacts of Structural Units for 3M8V
  • Structure Factors (102 Kb)
  • Retrieve 3M8V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3M8V from S2C, [Save to disk]
  • Re-refined 3m8v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3M8V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3M8V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3M8V, from MSDmotif at EBI
  • Fold representative 3m8v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3m8v_A] [3m8v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3M8V: [BTB ] by SMART
  • Other resources with information on 3M8V
  • Community annotation for 3M8V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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