3M9E	Transcription Dna	date	Mar 22, 2010
title	Thyroid Hormone Beta Dna Binding Domain Homodimer With Inver Palindrome Tre
authors	Y.Chen
compound		source
Molecule: Thyroid Hormone Receptor Beta Chain: A, B, E, F Fragment: Dna Binding Domain (Unp Residues 104 To 206) Synonym: C-Erba-Beta, C-Erba-2, Nuclear Receptor Subfamily Member 2; Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Erba2, Nr1a2, Rod, Thrb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(Rossetta2) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ppsumo
Molecule: Dna (5'- D(Aptptpgpapcpcptpcpapgpcptpgpapgpgptpcp 3'); Chain: C, D, G, H Engineered: Yes Other_details: Inverted Palindrome Thyroid Response Element		Synthetic: Yes Other_details: The Sequence Is Idealized
symmetry	Space Group: P 1 21 1	R_factor 0.179 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.738 83.468 75.743 90.00 98.28 90.00
method	X-Ray Diffraction	resolution	2.41 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component F, A, E, B
Primary reference	Structure of a thyroid hormone receptor DNA-binding domain homodimer bound to an inverted palindrome DNA response element., Chen Y, Young MA, Mol Endocrinol. 2010 Aug;24(8):1650-64. Epub 2010 Jul 7. PMID:20610536

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk] Biological Unit Coordinates (3m9e.pdb1.gz) 107 Kb Biological Unit Coordinates (3m9e.pdb2.gz) 108 Kb LPC: Ligand-Protein Contacts for 3M9E CSU: Contacts of Structural Units for 3M9E Structure Factors (554 Kb) Retrieve 3M9E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3M9E from S2C, [Save to disk] Re-refined 3m9e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3M9E in 3D

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Visual 3D analysis of 3M9E

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3M9E, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3m9e_B] [3m9e_F] [3m9e_H] [3m9e_G] [3m9e_C] [3m9e_D] [3m9e_E] [3m9e] [3m9e_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3M9E: [ZnF_C4 ] by SMART

Other resources with information on 3M9E

Community annotation for 3M9E at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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