3MCB Chaperone date Mar 29, 2010
title Crystal Structure Of Nac Domains Of Human Nascent Polypeptid Associated Complex (Nac)
authors L.F.Wang, W.C.Zhang, L.Wang, X.J.C.Zhang, X.M.Li, Z.Rao
compound source
Molecule: Nascent Polypeptide-Associated Complex Subunit Al
Chain: A
Fragment: Nac Domain (Unp Residues 79-132)
Synonym: Nac-Alpha, Alpha-Nac
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alpha Nac, Hsd48, Naca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Strain Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet-1

Molecule: Transcription Factor Btf3
Chain: B
Fragment: Nac Domain (Unp Residues 97-154)
Synonym: Rna Polymerase B Transcription Factor 3, Nac-Beta
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Beta Nac (Btf3b), Btf3, Nacb, Oksw-Cl.8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plamid
Expression_system_plasmid: Petduet-1
symmetry Space Group: P 65 2 2
R_factor 0.188 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.794 59.794 156.763 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand IOD enzyme
note 3MCB is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of NAC domains of human nascent polypeptide-associated complex (NAC) and its alphaNAC subunit., Wang L, Zhang W, Wang L, Zhang XC, Li X, Rao Z, Protein Cell. 2010 Apr;1(4):406-16. Epub 2010 May 8. PMID:21203952
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3mcb.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 3MCB
  • CSU: Contacts of Structural Units for 3MCB
  • Structure Factors (403 Kb)
  • Retrieve 3MCB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MCB from S2C, [Save to disk]
  • Re-refined 3mcb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MCB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MCB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MCB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mcb] [3mcb_A] [3mcb_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MCB: [NAC ] by SMART
  • Other resources with information on 3MCB
  • Community annotation for 3MCB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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