3MDI	Rna Binding Rna	date	Mar 30, 2010
title	Crystal Structure Of The 25kda Subunit Of Human Cleavage Fac Complex With Rna Uguaaa
authors	Q.Yang, G.M.Gilmartin, S.Doublie
compound		source
Molecule: Cleavage And Polyadenylation Specificity Factor S Chain: A, B Synonym: Cleavage And Polyadenylation Specificity Factor 25 Subunit, Cpsf 25 Kda Subunit, Pre-Mrna Cleavage Factor Im 2 Subunit, Nucleoside Diphosphate-Linked Moiety X Motif 21, N 21; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cfim25, Cpsf25, Cpsf5, Nudt21 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta (De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: His6-Mbp Fusion Vector
Molecule: Rna (5'-R(Upgpupapapa)-3') Chain: C Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 21 21 21	R_factor 0.180 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.362 72.037 96.160 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.07 Å
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3' processing., Yang Q, Gilmartin GM, Doublie S, Proc Natl Acad Sci U S A. 2010 Jun 1;107(22):10062-7. Epub 2010 May 17. PMID:20479262

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (3mdi.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 3MDI CSU: Contacts of Structural Units for 3MDI Structure Factors (367 Kb) Retrieve 3MDI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MDI from S2C, [Save to disk] Re-refined 3mdi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MDI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mdi_A] [3mdi_B] [3mdi] [3mdi_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 3MDI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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