3MDS Oxidoreductase(Superoxide Acceptor) date Oct 20, 1993
title Maganese Superoxide Dismutase From Thermus Thermophilus
authors M.L.Ludwig, A.L.Metzger, K.A.Pattridge, W.C.Stallings
compound source
Molecule: Manganese Superoxide Dismutase
Chain: A, B
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
symmetry Space Group: P 41 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.600 146.600 55.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MN3 enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1MNG
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • superoxide dismutase activit...


  • Primary referenceManganese superoxide dismutase from Thermus thermophilus. A structural model refined at 1.8 A resolution., Ludwig ML, Metzger AL, Pattridge KA, Stallings WC, J Mol Biol 1991 May 20;219(2):335-58. PMID:2038060
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (3mds.pdb1.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 3MDS
  • CSU: Contacts of Structural Units for 3MDS
  • Likely Quarternary Molecular Structure file(s) for 3MDS
  • Retrieve 3MDS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MDS from S2C, [Save to disk]
  • View 3MDS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MDS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3MDS, from MSDmotif at EBI
  • Genome occurence of 3MDS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3mdsa1, region A:1-92 [Jmol] [rasmolscript] [script source]
        - Domain d3mdsa2, region A:93-203 [Jmol] [rasmolscript] [script source]
        - Domain d3mdsb1, region B:1-92 [Jmol] [rasmolscript] [script source]
        - Domain d3mdsb2, region B:93-203 [Jmol] [rasmolscript] [script source]
  • Fold representative 3mds from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mds_B] [3mds] [3mds_A]
  • SWISS-PROT database: [P61503]
  • Domain organization of [SODM_THET8] by SWISSPFAM
  • Other resources with information on 3MDS
  • Community annotation for 3MDS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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