3MDY Transferase Isomerase date Mar 31, 2010
title Crystal Structure Of The Cytoplasmic Domain Of The Bone Morp Protein Receptor Type-1b (Bmpr1b) In Complex With Fkbp12 An 193189
authors A.Chaikuad, C.Sanvitale, P.Mahajan, N.Daga, C.Cooper, T.Krojer, I. S.Knapp, F.Von Delft, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, C. A.Bullock, Structural Genomics Consortium (Sgc)
compound source
Molecule: Bone Morphogenetic Protein Receptor Type-1b
Chain: A, C
Fragment: Bmpr1b Cytoplasmic (Gs And Kinase) Domain (Residu 502);
Synonym: Bmpr1b, Bmp Type-1b Receptor, Bmpr-1b
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bmpr1b
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse

Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Fkbp1a
Chain: B, D
Fragment: Fkbp12
Synonym: Fkbp12, Ppiase Fkbp1a, Fk506-Binding Protein 1a, F Rotamase, Immunophilin Fkbp12, 12 Kda Fk506-Binding Protein Fkbp, Fkbp-12;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fkbp12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.255
length a length b length c angle alpha angle beta angle gamma
65.410 80.010 183.330 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand LDN enzyme Transferase E.C. BRENDA
note 3MDY is a representative structure
A, C

D, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk]
  • Biological Unit Coordinates (3mdy.pdb1.gz) 150 Kb
  • Biological Unit Coordinates (3mdy.pdb2.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 3MDY
  • CSU: Contacts of Structural Units for 3MDY
  • Structure Factors (3109 Kb)
  • Retrieve 3MDY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MDY from S2C, [Save to disk]
  • Re-refined 3mdy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MDY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MDY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3MDY, from MSDmotif at EBI
  • Fold representative 3mdy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mdy_A] [3mdy] [3mdy_D] [3mdy_C] [3mdy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3MDY: [GS] [STYKc ] by SMART
  • Other resources with information on 3MDY
  • Community annotation for 3MDY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science