3MEK Transferase date Mar 31, 2010
title Crystal Structure Of Human Histone-Lysine N-Methyltransferas Complex With S-Adenosyl-L-Methionine
authors R.Lam, L.Dombrovski, Y.Li, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, H.Wu, Structural Genomics Cons (Sgc)
compound source
Molecule: Set And Mynd Domain-Containing Protein 3
Chain: A
Synonym: Zinc Finger Mynd Domain-Containing Protein 1
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smyd3, Zmynd1, Znfn3a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-(De3)-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.809 65.923 108.102 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand MSE, SAM, ZN enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (3mek.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 3MEK
  • CSU: Contacts of Structural Units for 3MEK
  • Structure Factors (689 Kb)
  • Retrieve 3MEK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MEK from S2C, [Save to disk]
  • Re-refined 3mek structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MEK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MEK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3MEK, from MSDmotif at EBI
  • Fold representative 3mek from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mek] [3mek_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MEK: [SET ] by SMART
  • Other resources with information on 3MEK
  • Community annotation for 3MEK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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