3MFH	Transferase Dna	date	Apr 02, 2010
title	Dna Polymerase Eta In Complex With Undamaged Dna
authors	T.D.Silverstein, R.E.Johnson, R.Jain, L.Prakash, S.Prakash, A.K.A
compound		source
Molecule: Dna Polymerase Eta Chain: A Fragment: Unp Residues 1-513 Synonym: Radiation-Sensitive Protein 30 Ec: 2.7.7.7 Engineered: Yes Mutation: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Yeast Organism_taxid: 4932 Gene: Rad30, Dbh1, Ydr419w Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Er2566 Expression_system_vector_type: Plasmid Expression_system_plasmid: Psl414
Molecule: 5'-D(Gptpcpcptpcpcpcpcptp(Doc))-3' Chain: P Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Tpapaptptpgpapgpgpgpgpapgpgpa Chain: T Engineered: Yes		Synthetic: Yes
symmetry	Space Group: C 2 2 21	R_factor 0.194 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.745 227.935 85.967 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	DOC, DTP, MG, SO4	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for the suppression of skin cancers by DNA polymerase eta., Silverstein TD, Johnson RE, Jain R, Prakash L, Prakash S, Aggarwal AK, Nature. 2010 Jun 24;465(7301):1039-43. PMID:20577207

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk] Biological Unit Coordinates (3mfh.pdb1.gz) 196 Kb LPC: Ligand-Protein Contacts for 3MFH CSU: Contacts of Structural Units for 3MFH Structure Factors (903 Kb) Retrieve 3MFH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MFH from S2C, [Save to disk] Re-refined 3mfh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MFH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3MFH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MFH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mfh] [3mfh_T] [3mfh_P] [3mfh_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3MFH

Community annotation for 3MFH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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