3MFI	Transferase Dna	date	Apr 02, 2010
title	Dna Polymerase Eta In Complex With A Cis-Syn Thymidine Dimer
authors	T.D.Silverstein, R.E.Johnson, R.Jain, L.Prakash, S.Prakash, A.K.A
compound		source
Molecule: Dna Polymerase Eta Chain: A Fragment: Unp Residues 1-513 Synonym: Radiation-Sensitive Protein 30 Ec: 2.7.7.7 Engineered: Yes Mutation: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Yeast Organism_taxid: 4932 Gene: Dbh1, Rad30, Ydr419w Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Er2566 Expression_system_vector_type: Plasmid Expression_system_plasmid: Psl414
Molecule: 5'-D(Gptpcpcptpcpcpcpcptp(Doc))-3' Chain: P Engineered: Yes		Synthetic: Yes Other_details: Oligonucleotide
Molecule: 5'-D(Tpapap(Ttd)Pgpapgpgpgpgpapgpgp Chain: T Engineered: Yes		Synthetic: Yes Other_details: Oligonucleotide
symmetry	Space Group: C 2 2 21	R_factor 0.164 R_Free 0.187
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.087 226.962 85.919 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.76 Å
ligand	DOC, DTP, MG, SO4, TTD	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for the suppression of skin cancers by DNA polymerase eta., Silverstein TD, Johnson RE, Jain R, Prakash L, Prakash S, Aggarwal AK, Nature. 2010 Jun 24;465(7301):1039-43. PMID:20577207

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk] Biological Unit Coordinates (3mfi.pdb1.gz) 198 Kb LPC: Ligand-Protein Contacts for 3MFI CSU: Contacts of Structural Units for 3MFI Structure Factors (1290 Kb) Retrieve 3MFI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MFI from S2C, [Save to disk] Re-refined 3mfi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MFI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3MFI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MFI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mfi_T] [3mfi_A] [3mfi] [3mfi_P] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3MFI

Community annotation for 3MFI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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