3MFV Hydrolase Hydrolase Inhibitor date Apr 04, 2010
title Crystal Structure Of Human Arginase I In Complex With 2- Aminohomohistidine
authors L.Di Costanzo, D.W.Christianson
compound source
Molecule: Arginase-1
Chain: A, B
Synonym: Type I Arginase, Liver-Type Arginase
Ec: 3.5.3.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11-D
symmetry Space Group: P 3
R_factor 0.141 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.660 90.660 69.707 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand MN, Z70 enzyme Hydrolase E.C.3.5.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary reference2-aminoimidazole amino acids as inhibitors of the binuclear manganese metalloenzyme human arginase I., Ilies M, Di Costanzo L, North ML, Scott JA, Christianson DW, J Med Chem. 2010 May 27;53(10):4266-76. PMID:20441173
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (3mfv.pdb1.gz) 151 Kb
  • Biological Unit Coordinates (3mfv.pdb2.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 3MFV
  • CSU: Contacts of Structural Units for 3MFV
  • Structure Factors (548 Kb)
  • Retrieve 3MFV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MFV from S2C, [Save to disk]
  • Re-refined 3mfv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MFV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MFV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MFV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mfv] [3mfv_A] [3mfv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MFV
  • Community annotation for 3MFV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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