3MGD Transferase date Apr 05, 2010
title Crystal Structure Of Predicted Acetyltransferase With Acetyl Clostridium Acetobutylicum At The Resolution 1.9a, Northeas Structural Genomics Consortium Target Car165
authors A.Kuzin, Y.Chen, J.Seetharaman, S.Sahdev, R.Xiao, C.Ciccosanti, L. J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Predicted Acetyltransferase
Chain: A, B
Engineered: Yes
 Organism_scientific: Clostridium Acetobutylicum
Organism_taxid: 1488
Gene: Ca_c0160
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)+ Magic
Expression_system_vector: Pet 21-23c
symmetry Space Group: C 1 2 1
R_factor 0.180 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.933 56.341 99.721 90.00 98.86 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ACO, MSE enzyme
note 3MGD is a representative structure
Gene CA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (3mgd.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (3mgd.pdb2.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 3MGD
  • CSU: Contacts of Structural Units for 3MGD
  • Structure Factors (180 Kb)
  • Retrieve 3MGD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MGD from S2C, [Save to disk]
  • Re-refined 3mgd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3MGD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3MGD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MGD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mgd_A] [3mgd] [3mgd_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3MGD
  • Community annotation for 3MGD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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