3MGM	Hydrolase	date	Apr 07, 2010
title	Crystal Structure Of Human Nudt16
authors	J.Yan, G.Lu, J.Zhang, J.Qi, Z.Li, F.Gao
compound		source
Molecule: U8 Snorna-Decapping Enzyme Chain: A, B Synonym: Nucleoside Diphosphate-Linked Moiety X Motif 16, N 16, U8 Snorna-Binding Protein H29k; Ec: 3.6.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hnudt16, Nudt16 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plamid Expression_system_plasmid: Pet-30a(+)
symmetry	Space Group: P 21 21 21	R_factor 0.184 R_Free 0.201
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.412 79.153 97.422 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand		enzyme	Hydrolase E.C.3.6.1 BRENDA
Gene Ontology	Chain Function Process Component A, B metalloexopeptidase activity... nucleotide phosphatase activ... IDP phosphatase activity

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk] Biological Unit Coordinates (3mgm.pdb1.gz) 108 Kb CSU: Contacts of Structural Units for 3MGM Structure Factors (409 Kb) Retrieve 3MGM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MGM from S2C, [Save to disk] Re-refined 3mgm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MGM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3MGM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MGM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mgm_B] [3mgm] [3mgm_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3MGM

Community annotation for 3MGM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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