3MGY Transferase date Apr 07, 2010
title Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe1 Function And Structural Dynamics And Reveals A Novel Dfg-Ou
authors H.V.Namboodiri, M.Karpusas, M.Bukhtiyarova, E.B.Springman
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase 14, Mapk 14, Mitogen-Activated Protein Alpha, Map Kinase P38 Alpha, Cytokine Suppressive Anti-Infl Drug-Binding Protein, Csaid-Binding Protein, Csbp, Max-Inte Protein 2, Map Kinase Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csbp, Csbp1, Csbp2, Cspb1, Mapk14, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: De3
symmetry Space Group: P 21 21 21
R_factor 0.239 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.790 70.770 75.780 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand BOG enzyme Transferase E.C.2.7.11.24 BRENDA
note 3MGY supersedes 2PV5
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMutagenesis of p38alpha MAP kinase establishes key roles of Phe169 in function and structural dynamics and reveals a novel DFG-OUT state., Bukhtiyarova M, Karpusas M, Northrop K, Namboodiri HV, Springman EB, Biochemistry. 2007 May 15;46(19):5687-96. Epub 2007 Apr 19. PMID:17441692
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (3mgy.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 3MGY
  • CSU: Contacts of Structural Units for 3MGY
  • Structure Factors (303 Kb)
  • Retrieve 3MGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MGY from S2C, [Save to disk]
  • Re-refined 3mgy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MGY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MGY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mgy] [3mgy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MGY: [S_TKc ] by SMART
  • Other resources with information on 3MGY
  • Community annotation for 3MGY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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