3MHJ Transferase date Apr 08, 2010
title Human Tankyrase 2 - Catalytic Parp Domain In Complex With 1- (Trifluoromethyl)-5h-Benzo[C][1,8]Naphtyridine-6-One
authors T.Karlberg, P.Schutz, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Co A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, I.Jo T.Kotenyova, N.Markova, M.Moche, P.Nordlund, T.Nyman, C.Persson, M.I.Siponen, L.Svensson, A.G.Thorsell, L.Tresaugues, S.Van Den J.Weigelt, M.Welin, M.Wisniewska, H.Schuler, Structural Genomic Consortium (Sgc)
compound source
Molecule: Tankyrase-2
Chain: A, B
Fragment: C-Terminal Parp Domain (Unp Residues 946-1162)
Synonym: Tank2, Tankyrase II, Tnks-2, Trf1-Interacting Anky Related Adp-Ribose Polymerase 2, Tankyrase-Like Protein, Ta Related Protein, Poly [Adp-Ribose] Polymerase 5b;
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parp5b, Tank2, Tnkl, Tnks2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: C 2 2 21
R_factor 0.171 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.547 97.727 119.126 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand M3F, SO4, ZN enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFamily-wide chemical profiling and structural analysis of PARP and tankyrase inhibitors., Wahlberg E, Karlberg T, Kouznetsova E, Markova N, Macchiarulo A, Thorsell AG, Pol E, Frostell A, Ekblad T, Oncu D, Kull B, Robertson GM, Pellicciari R, Schuler H, Weigelt J, Nat Biotechnol. 2012 Feb 19. doi: 10.1038/nbt.2121. PMID:22343925
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3mhj.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (3mhj.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3MHJ
  • CSU: Contacts of Structural Units for 3MHJ
  • Structure Factors (378 Kb)
  • Retrieve 3MHJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MHJ from S2C, [Save to disk]
  • Re-refined 3mhj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MHJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MHJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MHJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mhj_A] [3mhj] [3mhj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MHJ
  • Community annotation for 3MHJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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