3MIB Oxidized (Cu2+) peptidylglycine alpha-hydroxylating monooxygenase (PHM) with bound nitrite date
authors Chufan, E.E., Eipper, B.A., Mains, R.E., Amzel, L.M.
compound source
symmetry
R_factor
R_Free 0.24440
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand CU, GOL, NI, NO2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDifferential reactivity between two copper sites in peptidylglycine alpha-hydroxylating monooxygenase., Chufan EE, Prigge ST, Siebert X, Eipper BA, Mains RE, Amzel LM, J Am Chem Soc. 2010 Nov 10;132(44):15565-72. PMID:20958070
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3mib.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 3MIB
  • CSU: Contacts of Structural Units for 3MIB
  • Structure Factors (111 Kb)
  • Retrieve 3MIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MIB from S2C, [Save to disk]
  • Re-refined 3mib structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MIB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MIB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mib_A] [3mib]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MIB
  • Community annotation for 3MIB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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