3MJB Rna date Apr 12, 2010
title Cricket Paralysis Virus Igr Ires Domain 3 Rna Bound To Sulfa
authors J.S.Kieft, B.L.Golden, D.A.Costantino, E.Chase
compound source
Molecule: Domain 3 Of The Cricket Paralysis Virus Intergeni Ires Rna;
Chain: A
Fragment: Domain 3 Rna
Engineered: Yes
Mutation: Yes
 Synthetic: Yes
Other_details: In Vitro Transcription

Molecule: Rna (5'-R(Pupapapgpapapapupupupapcpc
Chain: B
Fragment: Domain 3 Rna
Engineered: Yes
Mutation: Yes
Synthetic: Yes
symmetry Space Group: P 41 21 2
R_factor 0.242 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.940 58.940 99.370 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand SO4 enzyme
Primary referenceIdentification and characterization of anion binding sites in RNA., Kieft JS, Chase E, Costantino DA, Golden BL, RNA. 2010 Apr 21. PMID:20410239
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (3mjb.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 3MJB
  • CSU: Contacts of Structural Units for 3MJB
  • Structure Factors (61 Kb)
  • Retrieve 3MJB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MJB from S2C, [Save to disk]
  • Re-refined 3mjb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3MJB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3MJB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MJB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mjb_B] [3mjb_A] [3mjb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3MJB
  • Community annotation for 3MJB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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