3MMY	Nuclear Protein	date	Apr 20, 2010
title	Structural And Functional Analysis Of The Interaction Betwee Nucleoporin Nup98 And The Mrna Export Factor Rae1
authors	A.Hoelz, Y.Ren
compound		source
Molecule: Mrna Export Factor Chain: A, C, E, G Synonym: Mrna-Associated Protein Mrnp 41, Rae1 Protein Homo Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rae1, Mrnp41 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell: Sf9 Cells
Molecule: Nuclear Pore Complex Protein Nup98 Chain: B, D, F, H Fragment: Unp Residues 158-213 Synonym: Nuclear Pore Complex Protein Nup98, Nucleoporin Nu Kda Nucleoporin; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nup98, Adar2 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell: Sf9 Cells
symmetry	Space Group: P 1	R_factor 0.206 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.396 79.298 93.407 76.63 89.96 89.94
method	X-Ray Diffraction	resolution	1.65 Å
ligand	MES	enzyme
note	3MMY is a representative structure
Gene Ontology	Chain Function Process Component A, E, C, G intracellular transport of v... F, B, H, D
Primary reference	Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1., Ren Y, Seo HS, Blobel G, Hoelz A, Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10406-11. Epub 2010 May 24. PMID:20498086

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk] Biological Unit Coordinates (3mmy.pdb1.gz) 71 Kb Biological Unit Coordinates (3mmy.pdb2.gz) 71 Kb Biological Unit Coordinates (3mmy.pdb3.gz) 71 Kb Biological Unit Coordinates (3mmy.pdb4.gz) 71 Kb LPC: Ligand-Protein Contacts for 3MMY CSU: Contacts of Structural Units for 3MMY Structure Factors (2761 Kb) Retrieve 3MMY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MMY from S2C, [Save to disk] Re-refined 3mmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3MMY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MMY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mmy_E] [3mmy_H] [3mmy_G] [3mmy] [3mmy_A] [3mmy_D] [3mmy_C] [3mmy_F] [3mmy_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3MMY: [WD40 ] by SMART

Other resources with information on 3MMY

Community annotation for 3MMY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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