3MNR Chaperone date Apr 22, 2010
title Crystal Structure Of Benzamide Snx-1321 Bound To Hsp90
authors J.M.Veal, P.Fadden, K.H.Huang, J.Rice, S.E.Hall, T.A.Haytstead
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: P
Fragment: Unp Residues 1-232, N-Terminal Domain
Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: I 2 2 2
R_factor 0.188 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.773 90.753 99.116 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand SD1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceApplication of chemoproteomics to drug discovery: identification of a clinical candidate targeting hsp90., Fadden P, Huang KH, Veal JM, Steed PM, Barabasz AF, Foley B, Hu M, Partridge JM, Rice J, Scott A, Dubois LG, Freed TA, Silinski MA, Barta TE, Hughes PF, Ommen A, Ma W, Smith ED, Spangenberg AW, Eaves J, Hanson GJ, Hinkley L, Jenks M, Lewis M, Otto J, Pronk GJ, Verleysen K, Haystead TA, Hall SE, Chem Biol. 2010 Jul 30;17(7):686-94. PMID:20659681
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (3mnr.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3MNR
  • CSU: Contacts of Structural Units for 3MNR
  • Structure Factors (282 Kb)
  • Retrieve 3MNR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MNR from S2C, [Save to disk]
  • Re-refined 3mnr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MNR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MNR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3MNR, from MSDmotif at EBI
  • Fold representative 3mnr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mnr_P] [3mnr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MNR: [HATPase_c ] by SMART
  • Other resources with information on 3MNR
  • Community annotation for 3MNR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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