3MPH Oxidoreductase date Apr 27, 2010
title The Structure Of Human Diamine Oxidase Complexed With An Inh Aminoguanidine
authors A.P.Mcgrath, J.M.Guss
compound source
Molecule: Amiloride-Sensitive Amine Oxidase
Chain: A, B
Synonym: Diamine Oxidase, Dao, Amiloride-Binding Protein, A Histaminase, Kidney Amine Oxidase, Kao;
Ec: 1.4.3.22
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Schneider 2
Gene: Abp1
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmtdao
symmetry Space Group: P 21 21 21
R_factor 0.178 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.685 94.604 196.051 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand AGQ, BMA, CA, CU, NAG enzyme Oxidoreductase E.C.1.4.3.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCorrelation of Active Site Metal Content in Human Diamine Oxidase with Trihydroxyphenylalanine Quinone Cofactor Biogenesis ., McGrath AP, Caradoc-Davies T, Collyer CA, Guss JM, Biochemistry. 2010 Sep 1. PMID:20722416
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk]
  • Biological Unit Coordinates (3mph.pdb1.gz) 250 Kb
  • LPC: Ligand-Protein Contacts for 3MPH
  • CSU: Contacts of Structural Units for 3MPH
  • Structure Factors (1645 Kb)
  • Retrieve 3MPH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MPH from S2C, [Save to disk]
  • Re-refined 3mph structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MPH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MPH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3MPH, from MSDmotif at EBI
  • Fold representative 3mph from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mph] [3mph_B] [3mph_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MPH
  • Community annotation for 3MPH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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