3MQ7 Antiviral Protein date Apr 27, 2010
title Crystal Structure Of Ectodomain Mutant Of Bst-2tetherincd3
authors Y.Xiong, H.Yang, J.Wang, W.Meng
compound source
Molecule: Bone Marrow Stromal Antigen 2
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Residues 47-161
Synonym: Bst-2, Tetherin, Hm1.24 Antigen
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bst2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmat9s
symmetry Space Group: P 1 21 1
R_factor 0.236 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.004 97.156 117.404 90.00 105.86 90.00
method X-Ray Diffractionresolution 2.28 Å
ligand CA, MSE enzyme
Primary referenceStructural insight into the mechanisms of enveloped virus tethering by tetherin., Yang H, Wang J, Jia X, McNatt MW, Zang T, Pan B, Meng W, Wang HW, Bieniasz PD, Xiong Y, Proc Natl Acad Sci U S A. 2010 Oct 12. PMID:20940320
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (3mq7.pdb1.gz) 188 Kb
  • Biological Unit Coordinates (3mq7.pdb2.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 3MQ7
  • CSU: Contacts of Structural Units for 3MQ7
  • Structure Factors (956 Kb)
  • Retrieve 3MQ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MQ7 from S2C, [Save to disk]
  • Re-refined 3mq7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MQ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MQ7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3MQ7, from MSDmotif at EBI
  • Fold representative 3mq7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mq7_I] [3mq7_L] [3mq7_J] [3mq7_B] [3mq7_C] [3mq7] [3mq7_D] [3mq7_H] [3mq7_A] [3mq7_F] [3mq7_E] [3mq7_G] [3mq7_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MQ7
  • Community annotation for 3MQ7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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