3MQC Antiviral Protein date Apr 27, 2010
title Crystal Structure Of Ectodomain Of Bst-2tetherincd317 (P21
authors Y.Xiong, H.Yang, J.Wang, W.Meng
compound source
Molecule: Bone Marrow Stromal Antigen 2
Chain: A, B, C, D
Fragment: Residues 47-161
Synonym: Bst-2, Tetherin, Hm1.24 Antigen
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bst2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmat9s
symmetry Space Group: P 1 21 1
R_factor 0.258 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.310 58.980 163.260 90.00 90.82 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MSE enzyme
Primary referenceStructural insight into the mechanisms of enveloped virus tethering by tetherin., Yang H, Wang J, Jia X, McNatt MW, Zang T, Pan B, Meng W, Wang HW, Bieniasz PD, Xiong Y, Proc Natl Acad Sci U S A. 2010 Oct 12. PMID:20940320
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (3mqc.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (3mqc.pdb2.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3MQC
  • CSU: Contacts of Structural Units for 3MQC
  • Structure Factors (178 Kb)
  • Retrieve 3MQC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MQC from S2C, [Save to disk]
  • Re-refined 3mqc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MQC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MQC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3MQC, from MSDmotif at EBI
  • Fold representative 3mqc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mqc_C] [3mqc] [3mqc_A] [3mqc_B] [3mqc_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MQC
  • Community annotation for 3MQC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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