3MSH Protein Binding date Apr 29, 2010
title Crystal Structure Of Hepatitis B X-Interacting Protein At Hi Resolution
authors I.Garcia-Saez, D.Skoufias
compound source
Molecule: Hepatitis B Virus X-Interacting Protein
Chain: A
Synonym: Hbv X-Interacting Protein, Hbx-Interacting Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hbxip, Xip
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-23d(+)
symmetry Space Group: P 41 21 2
R_factor 0.180 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.161 49.161 72.195 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.51 Å
ligand GOL, IPA, PG4, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Characterization of HBXIP: The Protein That Interacts with the Anti-Apoptotic Protein Survivin and the Oncogenic Viral Protein HBx., Garcia-Saez I, Lacroix FB, Blot D, Gabel F, Skoufias DA, J Mol Biol. 2010 Nov 6. PMID:21059355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (3msh.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 3MSH
  • CSU: Contacts of Structural Units for 3MSH
  • Structure Factors (915 Kb)
  • Retrieve 3MSH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MSH from S2C, [Save to disk]
  • Re-refined 3msh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MSH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MSH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3MSH, from MSDmotif at EBI
  • Fold representative 3msh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3msh_A] [3msh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MSH
  • Community annotation for 3MSH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science