3MSR Hydrolase date Apr 29, 2010
title The Crystal Structure Of An Amidohydrolase From Mycoplasma S
authors Z.Zhang, S.K.Burley, S.Swaminathan, New York Sgx Research Cente Structural Genomics (Nysgxrc)
compound source
Molecule: Amidohydrolases
Chain: A
Engineered: Yes
 Organism_scientific: Mycoplasma Synoviae
Organism_taxid: 262723
Strain: 53
Gene: Had, Ms53_0025
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)+Codon+Ril (P)-Stratagen
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3 (Bc)
symmetry Space Group: P 63 2 2
R_factor 0.150 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.248 111.248 138.308 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.16 Å
ligand GOL, MSE, PO4 enzyme
Gene MS53
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (3msr.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (3msr.pdb2.gz) 359 Kb
  • Biological Unit Coordinates (3msr.pdb3.gz) 180 Kb
  • Biological Unit Coordinates (3msr.pdb4.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 3MSR
  • CSU: Contacts of Structural Units for 3MSR
  • Structure Factors (408 Kb)
  • Retrieve 3MSR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MSR from S2C, [Save to disk]
  • Re-refined 3msr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3MSR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3MSR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MSR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3msr] [3msr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3MSR
  • Community annotation for 3MSR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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