3MU6 Dna Binding Protein Dna date May 01, 2010
title Inhibiting The Binding Of Class Iia Histone Deacetylases To Enhancer Factor-2 By Small Molecules
authors N.Jayathilaka, A.Han, K.Gaffney, R.Dey, J.He, J.Ye, T.Gao, N.A.Peta L.Chen
compound source
Molecule: Myocyte-Specific Enhancer Factor 2a
Chain: A, B, C, D
Synonym: Serum Response Factor-Like Protein 1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mef2a, Mef2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Apapapgpcptpaptptpaptptpapgpcptpt)-3');
Chain: E, G
Engineered: Yes

Synthetic: Yes

Molecule: Dna (5'- D(Tpapapgpcptpapaptpapaptpapgpcptpt)-3');
Chain: F, H
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 1
R_factor 0.230 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.567 61.622 61.478 114.12 89.99 89.95
method X-Ray Diffractionresolution 2.43 Å
ligand BXL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceInhibition of the function of class IIa HDACs by blocking their interaction with MEF2., Jayathilaka N, Han A, Gaffney KJ, Dey R, Jarusiewicz JA, Noridomi K, Philips MA, Lei X, He J, Ye J, Gao T, Petasis NA, Chen L, Nucleic Acids Res. 2012 Mar 6. PMID:22396528
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (3mu6.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (3mu6.pdb2.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 3MU6
  • CSU: Contacts of Structural Units for 3MU6
  • Structure Factors (137 Kb)
  • Retrieve 3MU6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MU6 from S2C, [Save to disk]
  • Re-refined 3mu6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MU6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MU6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MU6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mu6_E] [3mu6] [3mu6_A] [3mu6_B] [3mu6_G] [3mu6_C] [3mu6_H] [3mu6_D] [3mu6_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MU6: [MADS ] by SMART
  • Other resources with information on 3MU6
  • Community annotation for 3MU6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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