3MUP Apoptosis Inhibitor date May 03, 2010
title Ciap1-Bir3 Domain In Complex With The Smac-Mimetic Compound
authors F.Cossu, F.Malvezzi, G.Canevari, M.Milani
compound source
Molecule: Baculoviral Iap Repeat-Containing Protein 2
Chain: A, B, C, D
Fragment: Repeat 3 (Bir3) Domain, Unp Residues 251-363
Synonym: Inhibitor Of Apoptosis Proteins 1 (Ciap1), Inhibit Apoptosis Protein 2, Iap-2, Hiap-2, Hiap2, C-Iap1, Tnfr2-Tr Signaling Complex Protein 2, Iap Homolog B, Ring Finger Pro
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Api1, Birc2, Iap2, Mihb, Rnf48
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a(+)
symmetry Space Group: C 1 2 1
R_factor 0.226 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.630 79.790 98.410 90.00 92.48 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand SMK, ZN enzyme
Primary referenceRecognition of Smac-mimetic compounds by the BIR3 domain of cIAP1., Cossu F, Malvezzi F, Canevari G, Mastrangelo E, Lecis D, Delia D, Seneci P, Scolastico C, Bolognesi M, Milani M, Protein Sci. 2010 Oct 15. PMID:20954235
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (3mup.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 3MUP
  • CSU: Contacts of Structural Units for 3MUP
  • Structure Factors (261 Kb)
  • Retrieve 3MUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MUP from S2C, [Save to disk]
  • Re-refined 3mup structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MUP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MUP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mup_B] [3mup_D] [3mup_A] [3mup] [3mup_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MUP: [BIR ] by SMART
  • Other resources with information on 3MUP
  • Community annotation for 3MUP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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