3MVB	Transcription Dna	date	May 03, 2010
title	Crystal Structure Of A Triple Rfy Mutant Of Human Mterf1 Bou Termination Sequence
authors	E.Yakubovskaya, E.Mejia, J.Byrnes, E.Hambardjieva, M.Garcia-Diaz
compound		source
Molecule: Transcription Termination Factor, Mitochondrial Chain: O Fragment: Residues 57-396 Synonym: Mitochondrial Transcription Termination Factor 1, Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mterf1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Arctic (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptev-Hmpb3
Molecule: 5'-D(Aptptpapcpcpgpgpgpcptpcptpgpc Cptptpa)-3'; Chain: D Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Tpapapgpaptpgpgpcpapgpapgpcpc Tpapapt)-3'; Chain: E Engineered: Yes		Synthetic: Yes
symmetry	Space Group: C 2 2 21	R_factor 0.202 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.526 91.431 159.047 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.79 Å
Gene Ontology	Chain Function Process Component O
Primary reference	Helix unwinding and base flipping enable human MTERF1 to terminate mitochondrial transcription., Yakubovskaya E, Mejia E, Byrnes J, Hambardjieva E, Garcia-Diaz M, Cell. 2010 Jun 11;141(6):982-93. PMID:20550934

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (3mvb.pdb1.gz) 70 Kb CSU: Contacts of Structural Units for 3MVB Structure Factors (153 Kb) Retrieve 3MVB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MVB from S2C, [Save to disk] Re-refined 3mvb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MVB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3MVB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MVB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mvb_O] [3mvb_E] [3mvb_D] [3mvb] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3MVB: [Mterf ] by SMART

Other resources with information on 3MVB

Community annotation for 3MVB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---