3MVN Ligase date May 04, 2010
title Crystal Structure Of A Domain From A Putative Udp-N-Acetylmu Alanyl-Gamma-D-Glutamyl-Medo-Diaminopimelate Ligase From Ha Ducreyi 35000hp
authors E.V.Filippova, G.Minasov, L.Shuvalova, O.Kiryukhina, S.Clancy, A.Joachimiak, F.W.Anderson, Midwest Center For Structural Gen (Mcsg)
compound source
Molecule: Udp-N-Acetylmuramate:L-Alanyl-Gamma-D-Glutamyl-Me Diaminopimelate Ligase;
Chain: A
Engineered: Yes
 Organism_scientific: Haemophilus Ducreyi
Organism_taxid: 233412
Strain: 35000hp
Gene: Hd_0703, Mpl
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 41 21 2
R_factor 0.159 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.996 46.996 106.628 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MSE enzyme
Gene HD
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3mvn.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3MVN
  • CSU: Contacts of Structural Units for 3MVN
  • Structure Factors (142 Kb)
  • Retrieve 3MVN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MVN from S2C, [Save to disk]
  • Re-refined 3mvn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3MVN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3MVN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MVN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mvn] [3mvn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3MVN
  • Community annotation for 3MVN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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