3MZC Lyase Lyase Inhibitor date May 12, 2010
title Human Carbonic Ahydrase II In Complex With A Benzenesulfonam Inhibitor
authors B.S.Avvaru, J.Wagner, A.H.Robbins, R.Mckenna
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Fragment: Human Carbonic Anhydrase II
Synonym: Carbonic Anhydrase II, Ca-II, Carbonate Dehydratas Carbonic Anhydrase C, Cac;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Cah2_human
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.156 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.452 41.448 72.032 90.00 104.11 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand GOL, S6I, ZN BindingDB enzyme Lyase E.C.4.2.1.1 BRENDA
Gene CAH2 (H. sapiens)
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSelective hydrophobic pocket binding observed within the carbonic anhydrase II active site accommodate different 4-substituted-ureido-benzenesulfonamides and correlate to inhibitor potency., Pacchiano F, Aggarwal M, Avvaru BS, Robbins AH, Scozzafava A, McKenna R, Supuran CT, Chem Commun (Camb). 2010 Nov 28;46(44):8371-3. Epub 2010 Oct 5. PMID:20922253
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (3mzc.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 3MZC
  • CSU: Contacts of Structural Units for 3MZC
  • Structure Factors (316 Kb)
  • Retrieve 3MZC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MZC from S2C, [Save to disk]
  • Re-refined 3mzc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MZC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MZC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MZC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mzc] [3mzc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MZC: [Carb_anhydrase ] by SMART
  • Other resources with information on 3MZC
  • Community annotation for 3MZC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science