3N2Z Hydrolase date May 19, 2010
title The Structure Of Human Prolylcarboxypeptidase At 2.80 Angstr Resolution
authors S.M.Soisson, S.B.Patel, K.J.Lumb, S.Sharma
compound source
Molecule: Lysosomal Pro-X Carboxypeptidase
Chain: B
Synonym: Prolylcarboxypeptidase, Prcp, Proline Carboxypepti Angiotensinase C, Lysosomal Carboxypeptidase C;
Ec: 3.4.16.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prcp, Pcp
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell: Cho Cells
symmetry Space Group: H 3 2
R_factor 0.216 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.140 181.140 240.130 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.79 Å
ligand NAG, SO4 enzyme Hydrolase E.C.3.4.16.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural definition and substrate specificity of the S28 protease family: the crystal structure of human prolylcarboxypeptidase., Soisson SM, Patel SB, Abeywickrema PD, Byrne NJ, Diehl RE, Hall DL, Ford RE, Reid JC, Rickert KW, Shipman JM, Sharma S, Lumb KJ, BMC Struct Biol. 2010 Jun 11;10:16. PMID:20540760
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (3n2z.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 3N2Z
  • CSU: Contacts of Structural Units for 3N2Z
  • Structure Factors (298 Kb)
  • Retrieve 3N2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3N2Z from S2C, [Save to disk]
  • Re-refined 3n2z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3N2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3N2Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3N2Z, from MSDmotif at EBI
  • Fold representative 3n2z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3n2z_B] [3n2z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3N2Z
  • Community annotation for 3N2Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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