3N50	Transcription	date	May 24, 2010
title	Human Early B-Cell Factor 3 (Ebf3) Ipttig And Hlhlh Domains
authors	L.Lehtio, M.I.Siponen, C.H.Arrowsmith, C.Bountra, R.Collins, A.M. S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, I.Johansson, T.Ka T.Kotenyova, M.Moche, P.Nordlund, T.Nyman, C.Persson, H.Schuler, L.Svensson, A.G.Thorsell, L.Tresaugues, S.Van Den Berg, E.Wahlb J.Weigelt, M.Welin, M.Wisniewska, H.Berglund, Structural Genomi Consortium (Sgc)
compound		source
Molecule: Transcription Factor Coe3 Chain: A, B, C, D, E, F Fragment: Ipttig And Hlhlh Domains (Unp Residues 250-406) Synonym: Early B-Cell Factor 3, Ebf-3, Olf-1ebf-Like 2, O Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Coe3, Dkfzp667i0324, Ebf3, Hla-Dqb1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)R3 Prare Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic-Bsa4
symmetry	Space Group: I 2 3	R_factor 0.188 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 229.640 229.640 229.640 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structural determination of functional domains in Early B-cell Factor (EBF) family of transcription factors reveals similarities to rel DNA binding proteins and a novel dimerisation motif., Siponen MI, Wisniewska M, Lehtio L, Johansson I, Svensson L, Raszewski G, Nilsson L, Sigvardsson M, Berglund H, J Biol Chem. 2010 Jun 30. PMID:20592035

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk] Biological Unit Coordinates (3n50.pdb1.gz) 47 Kb Biological Unit Coordinates (3n50.pdb2.gz) 49 Kb Biological Unit Coordinates (3n50.pdb3.gz) 49 Kb Biological Unit Coordinates (3n50.pdb4.gz) 138 Kb CSU: Contacts of Structural Units for 3N50 Structure Factors (607 Kb) Retrieve 3N50 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3N50 from S2C, [Save to disk] Re-refined 3n50 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3N50 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3N50

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3N50, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3n50_C] [3n50_B] [3n50] [3n50_F] [3n50_A] [3n50_D] [3n50_E] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3N50: [HLH] [IPT ] by SMART

Other resources with information on 3N50

Community annotation for 3N50 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---