3N6B Oxidoreductase Oxidoreductase Inhibitor date May 25, 2010
title Structure Of Endothelial Nitric Oxide Synthase H373s Single Heme Domain Complexed With 6,6'-(2,2'-(Pyridine-3,5-Diyl)Bi 2,1-Diyl))Bis(4-Methylpyridin-2-Amine)
authors S.L.Delker, H.Li, T.L.Poulos
compound source
Molecule: Nitric Oxide Synthase
Chain: A, B
Synonym: Endothelial Nos, Enos, Ec-Nos, Nos Type III, Nosii Constitutive Nos, Cnos;
Ec: 1.14.13.39
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cow
Organism_taxid: 9913
Gene: Nos3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcwori
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.764 106.549 157.823 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand CAD, H4B, HEM, XFJ, ZN BindingDB enzyme Oxidoreductase E.C.1.14.13.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRole of zinc in isoform-selective inhibitor binding to neuronal nitric oxide synthase ., Delker SL, Xue F, Li H, Jamal J, Silverman RB, Poulos TL, Biochemistry. 2010 Dec 28;49(51):10803-10. Epub 2010 Dec 7. PMID:21138269
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (277 Kb) [Save to disk]
  • Biological Unit Coordinates (3n6b.pdb1.gz) 269 Kb
  • LPC: Ligand-Protein Contacts for 3N6B
  • CSU: Contacts of Structural Units for 3N6B
  • Structure Factors (278 Kb)
  • Retrieve 3N6B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3N6B from S2C, [Save to disk]
  • Re-refined 3n6b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3N6B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3N6B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3N6B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3n6b] [3n6b_B] [3n6b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3N6B
  • Community annotation for 3N6B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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