3N6W Oxidoreductase date May 26, 2010
title Crystal Structure Of Human Gamma-Butyrobetaine Hydroxylase
authors J.Rumnieks, A.Zeltins, A.Leonchiks, A.Kazaks, S.Kotelovica, K.Tar
compound source
Molecule: Gamma-Butyrobetaine Dioxygenase
Chain: A
Synonym: Gamma-Butyrobetaine,2-Oxoglutarate Dioxygenase, Ga Butyrobetaine Hydroxylase, Gamma-Bbh;
Ec: 1.14.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bbh, Bbox, Bbox1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Wk6
Expression_system_vector_type: Plasmid
symmetry Space Group: P 65 2 2
R_factor 0.208 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
164.800 164.800 97.780 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO4, ZN enzyme Oxidoreductase E.C.1.14.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of human gamma-butyrobetaine hydroxylase., Tars K, Rumnieks J, Zeltins A, Kazaks A, Kotelovica S, Leonciks A, Saripo J, Viksna A, Kuka J, Liepinsh E, Dambrova M, Biochem Biophys Res Commun. 2010 Jul 1. PMID:20599753
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (3n6w.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 3N6W
  • CSU: Contacts of Structural Units for 3N6W
  • Structure Factors (2567 Kb)
  • Retrieve 3N6W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3N6W from S2C, [Save to disk]
  • Re-refined 3n6w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3N6W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3N6W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3N6W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3n6w_A] [3n6w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3N6W
  • Community annotation for 3N6W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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