3N80 Oxidoreductase date May 27, 2010
title Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
authors L.Gonzalez-Segura, T.D.Hurley
compound source
Molecule: Aldehyde Dehydrogenase, Mitochondrial
Chain: A, B, C, D, E, F, G, H
Fragment: Mature Sequence, Residues 18-517
Synonym: Aldh Class 2, Aldhi, Aldh-E2
Ec: 1.2.1.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aldh2, Aldm
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt-7-7
symmetry Space Group: P 21 21 21
R_factor 0.149 R_Free 0.175
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.662 152.291 177.282 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CSO, EDO, GAI, MG, NA enzyme Oxidoreductase E.C.1.2.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (729 Kb) [Save to disk]
  • Biological Unit Coordinates (3n80.pdb1.gz) 363 Kb
  • Biological Unit Coordinates (3n80.pdb2.gz) 367 Kb
  • LPC: Ligand-Protein Contacts for 3N80
  • CSU: Contacts of Structural Units for 3N80
  • Structure Factors (8341 Kb)
  • Retrieve 3N80 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3N80 from S2C, [Save to disk]
  • Re-refined 3n80 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3N80 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3N80
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3N80, from MSDmotif at EBI
  • Fold representative 3n80 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3n80_F] [3n80_H] [3n80_G] [3n80_A] [3n80] [3n80_C] [3n80_D] [3n80_E] [3n80_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3N80
  • Community annotation for 3N80 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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