3N8E Chaperone date May 28, 2010
title Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin)
authors M.Wisniewska, T.Karlberg, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Collins, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammar I.Johansson, T.Kotenyova, M.Moche, P.Nordlund, T.Nyman, C.Persso P.Schutz, M.I.Siponen, L.Svensson, A.G.Thorsell, L.Tresaugues, S Berg, E.Wahlberg, J.Weigelt, M.Welin, H.Schuler, Structural Geno Consortium (Sgc)
compound source
Molecule: Stress-70 Protein, Mitochondrial
Chain: A, B
Fragment: Substrate Binding Domain Residues 439-597
Synonym: 75 Kda Glucose-Regulated Protein, Grp-75, Heat Sho Protein 9, Peptide-Binding Protein 74, Pbp74, Mortalin, Mot
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grp75, Hspa9, Hspa9b
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl-21(De3) R3 Prare
Expression_system_vector_type: Pnic-Bsa4
symmetry Space Group: P 62 2 2
R_factor 0.206 R_Free 0.242
length a length b length c angle alpha angle beta angle gamma
118.680 118.680 159.870 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3n8e.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (3n8e.pdb2.gz) 100 Kb
  • CSU: Contacts of Structural Units for 3N8E
  • Structure Factors (342 Kb)
  • Retrieve 3N8E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3N8E from S2C, [Save to disk]
  • Re-refined 3n8e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3N8E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3N8E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3N8E, from MSDmotif at EBI
  • Fold representative 3n8e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3n8e_A] [3n8e_B] [3n8e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3N8E
  • Community annotation for 3N8E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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