3N9U Splicing date May 31, 2010
title Crystal Structure Of The Complex Between The 25 Kda Subunit Kda Subunit (Rrm Domain) Of Human Cleavage Factor Im
authors L.Tresaugues, M.Welin, C.H.Arrowsmith, H.Berglund, C.Bountra, R.C A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, I.Jo T.Karlberg, S.Kol, T.Kotenyova, M.Moche, T.N.Nielsen, T.Nyman, C. H.Schuler, P.Schutz, M.I.Siponen, A.G.Thorsell, S.Van Der Berg, E.Wahlberg, J.Weigelt, M.Wisniewska, P.Nordlund, Structural Gen Consortium (Sgc)
compound source
Molecule: Cleavage And Polyadenylation Specificity Factor S
Chain: A, B
Fragment: Residues 21-227
Synonym: Cleavage And Polyadenylation Specificity Factor 25 Subunit, Cpsf 25 Kda Subunit, Pre-Mrna Cleavage Factor Im 2 Subunit, Nucleoside Diphosphate-Linked Moiety X Motif 21, N 21;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cfim25, Cpsf25, Cpsf5, Nudt21
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4

Molecule: Cleavage And Polyadenylation Specificity Factor S
Chain: C, I
Fragment: Rrm Domain, Residues 50-182
Synonym: Cleavage And Polyadenylation Specificity Factor 59 Subunit, Cpsf 59 Kda Subunit, Pre-Mrna Cleavage Factor Im 5 Subunit;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cpsf7
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 21 21 2
R_factor 0.196 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
165.950 124.730 40.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.92 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


C, I


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (3n9u.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 3N9U
  • CSU: Contacts of Structural Units for 3N9U
  • Structure Factors (3441 Kb)
  • Retrieve 3N9U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3N9U from S2C, [Save to disk]
  • Re-refined 3n9u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3N9U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3N9U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3N9U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3n9u_B] [3n9u_I] [3n9u] [3n9u_C] [3n9u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3N9U: [RRM ] by SMART
  • Other resources with information on 3N9U
  • Community annotation for 3N9U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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