3NB3 Membrane Protein date Jun 02, 2010
title The Host Outer Membrane Proteins Ompa And Ompc Are Packed At Sites In The Shigella Phage Sf6 Virion As Structural Compon
authors H.Zhao, R.D.Sequeira, N.A.Galeva, L.Tang
compound source
Molecule: Outer Membrane Protein A
Chain: A, B, C
Fragment: Outer Membrane Protein A
Synonym: Outer Membrane Protein II
 Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12

Molecule: Outer Membrane Protein C
Chain: D
Fragment: Outer Membrane Protein C
Synonym: Porin Ompc, Outer Membrane Protein 1b
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 19.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


D
  • virus receptor activity


    • Primary referenceThe host outer membrane proteins OmpA and OmpC are associated with the Shigella phage Sf6 virion., Zhao H, Sequeira RD, Galeva NA, Tang L, Virology. 2011 Jan 20;409(2):319-27. Epub 2010 Nov 10. PMID:21071053
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (3nb3.pdb1.gz) 6657 Kb
  • CSU: Contacts of Structural Units for 3NB3
  • Retrieve 3NB3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NB3 from S2C, [Save to disk]
    • View 3NB3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3NB3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NB3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nb3_A] [3nb3] [3nb3_B] [3nb3_C] [3nb3_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3NB3
  • Community annotation for 3NB3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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