3NBN Transcription Dna date Jun 03, 2010
title Crystal Structure Of A Dimer Of Notch Transcription Complex Hes1 Dna
authors K.L.Arnett, S.C.Blacklow
compound source
Molecule: Recombining Binding Protein Suppressor Of Hairles
Chain: A, D
Fragment: Residues 23-448
Synonym: J Kappa-Recombination Signal-Binding Protein, Rbp- Rbp-Jk, Rbp-J, Cbf-1, Renal Carcinoma Antigen Ny-Ren-30;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Igkjrb, Igkjrb1, Rbpj, Rbpjk, Rbpsuh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta II Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Neurogenic Locus Notch Homolog Protein 1
Chain: B, E
Fragment: Residues 1872-2126
Synonym: Notch 1, Hn1, Translocation-Associated Notch Prote Notch 1 Extracellular Truncation, Notch 1 Intracellular Dom
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Notch1, Tan1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest15

Molecule: Mastermind-Like Protein 1
Chain: C, F
Fragment: Residues 13-74
Synonym: Mam-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa0200, Maml1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset

Molecule: Dna, Hes1 Promoter
Chain: X
Engineered: Yes

Synthetic: Yes
Other_details: Sequence From Mouse And Human Hes1 Promoter

Molecule: Dna, Hes1 Promoter
Chain: Y
Engineered: Yes

Synthetic: Yes
Other_details: Sequence From Mouse And Human Hes1 Promoter
symmetry Space Group: C 1 2 1
R_factor 0.254 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
295.112 108.059 87.239 90.00 102.52 90.00
method X-Ray Diffractionresolution 3.45 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D


F, C


Primary referenceStructural and mechanistic insights into cooperative assembly of dimeric Notch transcription complexes., Arnett KL, Hass M, McArthur DG, Ilagan MX, Aster JC, Kopan R, Blacklow SC, Nat Struct Mol Biol. 2010 Nov;17(11):1312-7. Epub 2010 Oct 24. PMID:20972443
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (250 Kb) [Save to disk]
  • Biological Unit Coordinates (3nbn.pdb1.gz) 242 Kb
  • CSU: Contacts of Structural Units for 3NBN
  • Structure Factors (550 Kb)
  • Retrieve 3NBN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NBN from S2C, [Save to disk]
  • Re-refined 3nbn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NBN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NBN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NBN, from MSDmotif at EBI
  • Fold representative 3nbn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nbn] [3nbn_E] [3nbn_F] [3nbn_B] [3nbn_Y] [3nbn_A] [3nbn_X] [3nbn_D] [3nbn_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3NBN: [ANK] [BTD] [LAG1_DNAbind] [MamL-1 ] by SMART
  • Other resources with information on 3NBN
  • Community annotation for 3NBN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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