3NBT Electron Transport date Jun 04, 2010
title Crystal Structure Of Trimeric Cytochrome C From Horse Heart
authors M.Taketa, H.Komori, S.Hirota, Y.Higuchi
compound source
Molecule: Cytochrome C
Chain: A, B, C, D, E, F
Organism_scientific: Equus Caballus
Organism_common: Domestic Horse,Equine
Organism_taxid: 9796
Organ: Heart
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.204 95.661 130.935 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand HEC, PEG, PG4, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCytochrome c polymerization by successive domain swapping at the C-terminal helix., Hirota S, Hattori Y, Nagao S, Taketa M, Komori H, Kamikubo H, Wang Z, Takahashi I, Negi S, Sugiura Y, Kataoka M, Higuchi Y, Proc Natl Acad Sci U S A. 2010 Jul 6. PMID:20615990
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (3nbt.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (3nbt.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3NBT
  • CSU: Contacts of Structural Units for 3NBT
  • Structure Factors (479 Kb)
  • Retrieve 3NBT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NBT from S2C, [Save to disk]
  • Re-refined 3nbt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NBT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NBT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NBT, from MSDmotif at EBI
  • Fold representative 3nbt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nbt_F] [3nbt_B] [3nbt_A] [3nbt_E] [3nbt_D] [3nbt] [3nbt_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NBT
  • Community annotation for 3NBT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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