3NCE Hormone Hormone Receptor date Jun 04, 2010
title A Mutant Human Prolactin Receptor Antagonist H27a In Complex Mutant Extracellular Domain H188a Of The Human Prolactin Re
authors M.V.Kulkarni, M.C.Tettamanzi, J.W.Murphy, C.Keeler, D.G.Myszka, N.E.Chayen, E.J.Lolis, M.E.Hodsdon
compound source
Molecule: Prolactin
Chain: A
Fragment: Sequence Database Residues 43-227
Synonym: Prl
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hprl, Prl
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7l

Molecule: Prolactin Receptor
Chain: B
Fragment: Extracellular Domain Residues 26-234
Synonym: Prl-R
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hprlr, Prlr
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 65
R_factor 0.177 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.283 123.283 72.489 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, CO3, NA enzyme
note 3NCE is a representative structure
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTwo independent histidines, one in human prolactin and one in its receptor, are critical for pH dependent receptor recognition and activation., Kulkarni MV, Tettamanzi MC, Murphy JW, Keeler C, Myszka DG, Chayen NE, Lolis EJ, Hodsdon ME, J Biol Chem. 2010 Sep 30. PMID:20889499
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3nce.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 3NCE
  • CSU: Contacts of Structural Units for 3NCE
  • Structure Factors (313 Kb)
  • Retrieve 3NCE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NCE from S2C, [Save to disk]
  • Re-refined 3nce structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NCE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NCE, from MSDmotif at EBI
  • Fold representative 3nce from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nce_B] [3nce] [3nce_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NCE: [FN3 ] by SMART
  • Other resources with information on 3NCE
  • Community annotation for 3NCE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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